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Software for intravital microscopy
Image analysis tools for issue cytometry
Commercial and academic software for tissue cytometry
Software for intravital microscopy
![imaging](https://mc-34647c8d-0ad3-4e6c-832a-7092-cdn.azureedge.net/-/media/department/internal-medicine/research/icbm/imart-thubnail.png?rev=e6b9de4a50204997962d1106753176e4&extension=webp&la=en&h=236&w=959&hash=2F85B09839C59ED5279C341B0B0B34D6)
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IMART intravital microscopy motion correction software - time series of mouse kidney
(Left to right) original, rigid correction, non-rigid correction
Kevin Lorenz, Edward Delp, Paul Salama and Ken Dunn
PMID: 26090271
![imaging from ICBM](https://mc-34647c8d-0ad3-4e6c-832a-7092-cdn.azureedge.net/-/media/department/internal-medicine/research/icbm/scheduling.jpg?rev=a120f8c3f4f745b4b8c160482d4ca96a&extension=webp&la=en&h=451&w=450&hash=E60F3D2E59F85353CA55893365228D28)
Video
STAFF microvascular flow measurement software - time series of rat liver
Sherry Clendenon, Jeff Clendenon and Ken Dunn
PMID: 30502365
Image analysis tools for tissue cytometry
![](https://mc-34647c8d-0ad3-4e6c-832a-7092-cdn.azureedge.net/-/media/department/internal-medicine/research/icbm/dinavid.png?rev=c97efe0555854f229033b4015994a118&extension=webp&la=en&h=505&w=898&hash=BFB60D9CAD95087A8399B0C44B70EBAF)
DINAVID online volumetric image exploration and analysis system
Alain Chen, Liming Wu, Edward Delp, Paul Salama and Ken Dunn
![](https://mc-34647c8d-0ad3-4e6c-832a-7092-cdn.azureedge.net/-/media/department/internal-medicine/research/icbm/deepsynth-thumbnail.png?rev=0f0f76176c8e4427b3be72583b8c30c0&extension=webp&la=en&h=388&w=854&hash=EA7776AA27E71521E11D82060687888A)
Video
Deepsynth machine learning nucleus segmentation software
(Left to right) Original, Segmentations by Deepsynth, CellProfiler and CellProfiler with optimization
David Ho, Chichen Fu, Edward Delp, Paul Salama and Ken Dunn
PMID: 31797882
![](https://mc-34647c8d-0ad3-4e6c-832a-7092-cdn.azureedge.net/-/media/department/internal-medicine/research/icbm/vtea.jpg?rev=bb86a7d37b82441a9052b3335fbf4437&extension=webp&la=en&h=2691&w=1777&hash=46494E3473C15A11D2080146E844CE25)
VTEA volumetric image exploration and analysis software
Seth Winfree, Tarek Ashkar and Ken Dunn
Commercial and academic software for tissue cytometry
![](https://mc-34647c8d-0ad3-4e6c-832a-7092-cdn.azureedge.net/-/media/department/internal-medicine/research/icbm/fluorender_ui.png?rev=eddf3b2e03d14a57ada0406faa902a12&extension=webp&la=en&h=456&w=800&hash=BB7CC0153758224B1A2F1D9C993668F7)
Fluorender – Multiplex image and data analysis freeware developed by the Scientific Computing and Imaging Institute
![](https://mc-34647c8d-0ad3-4e6c-832a-7092-cdn.azureedge.net/-/media/department/internal-medicine/research/icbm/akoya-mav.jpg?rev=47582eb455724a1b9f5632fa448d6b28&extension=webp&la=en&h=1028&w=1921&hash=CC4173D928D26B539CD6EBA9FC0B8CD8)
Akoya MAV software – Image and data analysis software developed specifically for highly-multiplexed fluorescence images, such as CODEX
![](https://mc-34647c8d-0ad3-4e6c-832a-7092-cdn.azureedge.net/-/media/department/internal-medicine/research/icbm/indica-labs.jpg?rev=89cc1939081342a0bc842dfc6d2e1f82&extension=webp&la=en&h=565&w=778&hash=D0BF4CBBF69ACECD45E7CFBE1E47F975)
Indica Labs HALO software – Multiplexed image processing, segmentation and classification based upon artificial intelligence