The Medical Sciences Program in Bloomington is unique among the IU School of Medicine campuses in that it educates medical students seeking an MD as well as graduate and undergraduate students. Bloomington offers a Big 10 learning environment on an iconic campus.

With six major hospitals housing about 2000 beds, medical students in Evansville have access to physician educators in a range of medical specialties. An expanded residency program here will provide more than 100 new graduate medical education positions over the next few years.

The Fort Wayne campus offers clinical education in both rural and urban communities through two large hospital systems serving the region. A Student Research Fellowship Program offers med students nine weeks of summer research experience.

Students and faculty in Indianapolis benefit from close proximity to some of Indiana’s largest teaching hospitals and the Richard L. Roudebush Veterans Administration Medical Center. This campus offers medical education in the heart of one of the most progressive and economically healthy cities in the United States.

Muncie is the School’s only campus that’s located on hospital property, giving medical students a front-row four-year medical education with all the amenities that come with being located near the campus of Ball State University, a bustling college environment.

Located in a highly populated urban region just 25 miles from downtown Chicago, the Gary campus offers medical students unparalleled access to clinical care at 11 major teaching hospitals housing 2800 beds. An expanded residency program in Gary will accommodate more than 100 new graduate medical education positions.

IU School of Medicine-South Bend is located on the campus of Notre Dame, offering a rich campus life in a traditionally collegiate community. Students here gain clinical care experience at the Navari Student Outreach Clinic, and external funding for faculty research exceeds $2 million per year.

Known for its rural medical education program, IU School of Medicine-Terre Haute meets the increased need for physicians to serve rural communities throughout the state of Indiana and beyond. This unique four-year medical school program emphasizes primary care and other specialties of need in rural communities.

Located on the campus of Purdue University, the West Lafayette campus offers a Big Ten campus atmosphere and opportunities to supplement the MD curriculum with research experience in the collaborative labs and research centers here. This IU School of Medicine campus offers on-campus housing to med students.

Research

Medical Genomics

The Center for Medical Genomics at Indiana University School of Medicine is a state-of-the-art technology center that provides medical scientists with affordable access to high-quality high-throughput genomics services in a timely fashion.

Progress in the human genome project provide the foundation for the center’s approach for studying health and disease, in which differences in the sequence and expression of thousands of genes can be analyzed. The center is equipped with a variety of advanced genomics technologies, including next-generation sequencing and microarray and single-nucleotide polymorphism (SNP) genotyping instrumentation.

Support for Biomedical Researchers

With a service-first mentality and a mission to improve population health by facilitating biomedical research advancements with state-of-the-art genomic technologies for studying gene expression and genetics, the Center for Medical Genomics at IU School of Medicine provides infrastructure and consults for the use of genomic technology in studies of disease and in other biomedical research.

The professional staff of the Center for Medical Genomics are available to investigators at all stages of the experiment, including study design, sample quality assessment, data delivery and analysis consultation. In collaboration with the Bioinformatics Core and the Center for Computational Biology and Bioinformatics, the Center for Medical Genomics can also provide fee-for-service bioinformatics analysis on sequencing, microarray and genotyping experiments. This center is an Indiana CTSI core facility open to investigators from Indiana University, Purdue University and University of Notre Dame.

Services and Instrumentation

The Center for Medical Genomics provides full scale high-throughput sequencing services, including genomic DNA sequencing (whole genome sequencing, whole exome sequencing and gene panel target sequencing), transcriptome RNA sequencing (whole transcriptome sequencing, mRNA sequencing and small RNA sequencing), methylation capture following sequencing, and protein DNA/RNA interaction (ChIP-seq, ChIP-exo and CLIP-seq).

Center staff has experience in conducting sequencing experiment from standard samples, blood samples, low quantity samples (as long as 10ng total RNA), and low quality or degraded samples (from FFPE or micro-dissection). Investigators are responsible for conducting the pulled-down assay and provide the core with good quality DNA. Staff of the Center for Medical Genomics can work with investigators on adopting/developing other assays that require high-throughput sequencing technology.

Next Generation Sequencing instrumentation at the center includes:

  • Illumina HiSeq 4000
  • Illumina NextSeq 500
  • LifeTech Ion Proton sequencing system

The Center for Medical Genomics provides consultation, infrastructure and expertise in use of Affymetrix microarrays technology. The team also offers data analysis and bioinformatics expertise needed to interpret the large amount of data generated in these experiments. Much effort has gone into experimental consistency and quality control at all steps.

Microarray instrumentation at the center includes the Affymetrix GeneChip ® cartridge system. Services include gene expression from Total RNA (wide range of organisms), gene expression from limited samples (<5ng Total RNA), gene expression from FFPE or other degraded samples, and miRNA expression (miRNA array 4.0 – multi organism array).

The Center for Medical Genomics uses the Sequenom MassArray® system for targeted genotyping, generally in groups of up to 25 or 30 SNPs per assay. The Sequenom is a mass spectrometer-based SNP genotyping system that uses a modified single base extension reaction. It is an excellent choice for candidate gene studies and for following up results from GWAS and next- generation sequencing. To date, the center has produced more than 20 million targeted SNP genotypes. The Sequenom MassArray® system can be used to genotype SNPs in any organism. Services include high-throughput targeted genotyping using SNPs, allele-specific expression and validation of methylation sites.

DNA/RNA Analysis services include quality/ quantity assessment as well as shearing and sample extraction:

  • DNA/RNA quality/quantity assessment instrumentation at the center include the Nanodrop, an Agilent 2100 Bioanalyzer and the Qubit Fluorometer. Services include DNA/RNA quantification, DNA quality-control and fragment-size analysis, RNA quality (measure of fragmentation/degradation) and miRNA quality.
  • DNA/RNA shearing instrumentation at the center includes the Covaris S2.
  • DNA/RNA sample extraction is also available. For information regarding extraction, email Dr. Yunlong Liu, the Center for Medical Genomics director.